Sequence details Structure Filter Record details. Secondary Structure Record details. Accessibility Record details. The identifier of an entry. The sequence of an entry. accessibility details for the query sequence This is the position in the sequence. This field may sometimes be empty due to gaps in the sequence-structure alignment. This is the accessibility for the specified position in the match in the sequence. This is the target domain structure for the specified position in the sequence. The target domain identifier (derived/taken from SCOP) is composed of the pdb file (first 4 chars) and the specific polypeptide chain (subsequent chars) secondary structure details for the query sequence This is the start value of the match in the sequence. This field may sometimes be empty due to gaps in the sequence-structure alignment This is the end value of the match in the sequence. This field may sometimes be empty due to gaps in the sequence-structure alignment. This is the secondary structure for the specified positions in the sequence. This is the target domain structure for the specified positions in the sequence. The target domain identifier (derived/taken from SCOP) is composed of the pdb file (first 4 chars) and the specific polypeptide chain (subsequent chars) details of each regular expression match evaluated by the structure filter A reference to an ELM in the ELM resource(http://elm.eu.org) A regular expression describing the linear motif. This is the start value of the match in the sequence. This is the end value of the match in the sequence. This is the accessibility score for the specified match in the sequence. The scores vary over a range of 0.0 (worst) to 1.5 (best). This is the p-value associated with the accessibility score for the specified match in the sequence. This is the secondary structure score for the specified match in the sequence. The scores vary over a range of 0.0 (worst) to 1.0 (best). This is the p-value associated with the secondary structure score for the specified match in the sequence. This is the total score for the specified match in the sequence. It is a combination of the secondary structure score and the accessibility score. This is the p-value associated with the total score for the specified match in the sequence. This is the target domain structure for the specified match in the sequence. The target domain identifier (derived/taken from SCOP) is composed of the pdb file (first 4 chars) and the specific polypeptide chain (subsequent chars) The percentage identity gives the similarity of the domain sequence to the query sequence. Based on a benchmark of true motifs in solved structures, the benchmark assignment is one of sparse, neutral or enriched. The accessibility and secondary structure values for each residue in the match. accessibility and secondary structure values for each residue in the match This is the position in the specified match in the sequence. This is the target domain structure for the specified position in the sequence. The target domain identifier (derived/taken from SCOP) is composed of the pdb file (first 4 chars) and the specific polypeptide chain (subsequent chars) This is the accessibility for the specified position in the match in the sequence. This is the secondary structure for the specified position in the match in the sequence. This operation is the initial operation in a stateful interaction with the Structure Filter service.

This operation returns the status of a job identified by its job identifier. A client should use this operation to be aware when/if the results are available.

This operation returns the resulting predictions.

This WSDL file describe the Structure Filter Web Service. This web service is useful for evaluating the location of candidate short regulatory sequences in proteins (linear motifs) which need to be accessible to interact with their ligand domains. The StructureFilter web-service calculates an accessibility score, secondary structure score and total score (as well as various other features) for each match of a regular expression or ELM in the query sequence for which structural information is available. (If a regular expression match is determined as having no associated structural information available, no reference is made to this match in the result set.) A structure filter for the Eukaryotic Linear Motif Resource. Allegra Via, Cathryn M Gould, Christine Gemuend, Toby J Gibson and Manuela Helmer-Citterich. (BMC Bioinformatics, 2009, in review) http://structurefilter.embl.de/webservice/clients/structureFilterClient.txt